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1

Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

Hinako Takehisa, Yutaka Sato, Motoko Igarashi, Tomomi Abiko, Baltazar A. Antonio, Kaori Kamatsuki, Hiroshi Minami, Nobukazu Namiki, Yoshiaki Inukai, Mikio Nakazono, Yoshiaki Nagamura

Journal:

The Plant Journal

Année:

2012

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2012

2

Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses

Imene Rajhi, Takaki Yamauchi, Hirokazu Takahashi, Shunsaku Nishiuchi, Katsuhiro Shiono, Ryosuke Watanabe, Ahmed Mliki, Yoshiaki Nagamura, Nobuhiro Tsutsumi, Naoko K. Nishizawa, Mikio Nakazono

Journal:

New Phytologist

Année:

2011

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2011

3

Microarray analysis of gene expression patterns during fruit development in European pear (Pyrus communis)

Nashima, Kenji, Shimizu, Tokurou, Nishitani, Chikako, Yamamoto, Toshiya, Takahashi, Hirokazu, Nakazono, Mikio, Itai, Akihiro, Isuzugawa, Kanji, Hanada, Toshio, Takashina, Tadashi, Matsumoto, Shogo, Ot

Journal:

Scientia Horticulturae

Année:

2013

Langue:

english

Fichier:

PDF, 775 KB

english, 2013

4

Arabidopsisdynamin-related protein DRP2B is co-localized with DRP1A on the leading edge of the forming cell plate

Masaru Fujimoto, Shin-ichi Arimura, Mikio Nakazono, Nobuhiro Tsutsumi

Journal:

Plant Cell Reports

Année:

2008

Langue:

english

Fichier:

PDF, 322 KB

english, 2008

5

Fusion of mitochondria in tobacco suspension cultured cells is dependent on the cellular ATP level but not on actin polymerization

Kairo Wakamatsu, Masaru Fujimoto, Mikio Nakazono, Shin-ichi Arimura, Nobuhiro Tsutsumi

Journal:

Plant Cell Reports

Année:

2010

Langue:

english

Fichier:

PDF, 540 KB

english, 2010

6

Formation of grain chalkiness and changes in water distribution in developing rice caryopses grown under high-temperature stress

Tsutomu Ishimaru, Akemi K. Horigane, Masashi Ida, Norio Iwasawa, Yumiko A. San-oh, Mikio Nakazono, Naoko K. Nishizawa, Takehiro Masumura, Motohiko Kondo, Mitsuru Yoshida

Journal:

Journal of Cereal Science

Année:

2009

Langue:

english

Fichier:

PDF, 708 KB

english, 2009

7

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays)

TOMOMI ABIKO, LUKASZ KOTULA, KATSUHIRO SHIONO, AL IMRAN MALIK, TIMOTHY DAVID COLMER, MIKIO NAKAZONO

Journal:

Plant, Cell & Environment

Année:

2012

Langue:

english

Fichier:

PDF, 3.53 MB

english, 2012

8

Laser-Capture Microdissection, a Tool for the Global Analysis of Gene Expression in Specific Plant Cell Types: Identification of Genes Expressed Differentially in Epidermal Cells or Vascular Tissues of Maize

Mikio Nakazono, Fang Qiu, Lisa A. Borsuk and Patrick S. Schnable

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2003

9

Lysigenous aerenchyma formation in maize root is confined to cortical cells by regulation of genes related to generation and scavenging of reactive oxygen species

Yamauchi, Takaki, Rajhi, Imene, Nakazono, Mikio

Journal:

Plant Signaling & Behavior

Année:

2011

Langue:

english

Fichier:

PDF, 617 KB

english, 2011

10

On-Site Lateral Loading Test of a Traditional Timber House in Japan

Fujita, Kaori, Kondo, Tetsu, Koshihara, Mikio, Iwata, Shinji, Nakazono, Mahito, Sakamoto, Isao

Journal:

Journal of Asian Architecture and Building Engineering

Année:

2004

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2004

11

Supranormal orientation selectivity of visual neurons in orientation-restricted animals

Sasaki, Kota S., Kimura, Rui, Ninomiya, Taihei, Tabuchi, Yuka, Tanaka, Hiroki, Fukui, Masayuki, Asada, Yusuke C., Arai, Toshiya, Inagaki, Mikio, Nakazono, Takayuki, Baba, Mika, Kato, Daisuke, Nishimot

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 3.84 MB

english, 2015

12

A Point Mutation of Adh1 Gene is Involved in the Repression of Coleoptile Elongation under Submergence in Rice

Saika, Hiroaki, Matsumura, Hideo, Takano, Tetsuo, Tsutsumi, Nobuhiro, Nakazono, Mikio

Journal:

Breeding Science

Année:

2006

Langue:

english

Fichier:

PDF, 278 KB

english, 2006

13

Transcriptome Analysis of Giant Pear Fruit with Fruit-specific DNA Reduplication on a Mutant Branch

Nashima, Kenji, Takahashi, Hirokazu, Nakazono, Mikio, Shimizu, Tokurou, Nishitani, Chikako, Yamamoto, Toshiya, Itai, Akihiro, Isuzugawa, Kanji, Hanada, Toshio, Takashina, Tadashi, Kato, Mari, Matsumot

Journal:

Journal of the Japanese Society for Horticultural Science

Année:

2013

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2013

14

Laser microdissection-based tissue specific transcriptome analyses reveals novel regulatory network of genes involved in heat-induced grain chalk in rice endosperm

Ishimaru, Tsutomu, Parween, Sabiha, Saito, Yuhi, Shigemitsu, Takanari, Yamakawa, Hiromoto, Nakazono, Mikio, Masumura, Takehiro, Nishizawa, Naoko K, Kondo, Motohiko, Sreenivasulu, Nese

Journal:

Plant and Cell Physiology

Année:

2018

Langue:

english

Fichier:

PDF, 37.93 MB

english, 2018

15

Differences in xylem development between Dutch and Japanese tomato (Solanum lycopersicum) correlate with cytokinin levels in hypocotyls

Qi, Xiaohua, Takahashi, Hirokazu, Kawasaki, Yasushi, Ohta, Yuya, Isozaki, Masahide, Kojima, Mikiko, Takebayashi, Yumiko, Sakakibara, Hitoshi, Imanishi, Shunsuke, Chen, Xuehao, Nakazono, Mikio

Journal:

Annals of Botany

Année:

2020

Fichier:

PDF, 1.12 MB

2020

16

Mechanisms for coping with submergence and waterlogging in rice

Shunsaku Nishiuchi, Takaki Yamauchi, Hirokazu Takahashi, Lukasz Kotula, Mikio Nakazono

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2012

17

Palindromic repeated sequences (PRSs) in the mitochondrial genome of rice: evidence for their insertion after divergence of the genusOryzafrom the other Gramineae

Mikio Nakazono, Akira Kanno, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Plant Molecular Biology

Année:

1994

Langue:

english

Fichier:

PDF, 846 KB

english, 1994

18

A small repeated sequence contains the transcription initiation sites for bothtrnfMandrrn26in rice mitochondria

Mikio Nakazono, Nobuhiro Tsutsumi, Masahiro Sugiura, Atsushi Hirai

Journal:

Plant Molecular Biology

Année:

1995

Langue:

english

Fichier:

PDF, 423 KB

english, 1995

19

Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice

Mikio Nakazono, Atsushi Hira

Journal:

Molecular Genetics and Genomics

Année:

1993

Langue:

english

Fichier:

PDF, 622 KB

english, 1993

20

Evolutionary variations in DNA sequences transferred from chloroplast genomes to mitochondrial genomes in the Gramineae

Natsu Watanabe, Mikio Nakazono, Akira Kanno, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Current Genetics

Année:

1994

Langue:

english

Fichier:

PDF, 938 KB

english, 1994

21

Therps3-rpl16-nad3-rps12gene cluster in rice mitochondrial DNA is transcribed from alternative promoters

Mikio Nakazono, Hiraku Itadani, Tatsuya Wakasugi, Nobuhiro Tsutsumi, Masahiro Sugiura, Atsushi Hirai

Journal:

Current Genetics

Année:

1995

Langue:

english

Fichier:

PDF, 851 KB

english, 1995

22

Characterization of two cDNA clones encoding isozymes of the F1F0-ATPase inhibitor protein of rice mitochondria

Mikio Nakazono, Takashi Imamura, Nobuhiro Tsutsumi, Takuji Sasaki, Atsushi Hirai

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 293 KB

english, 2000

23

Maintenance of chloroplast-derived sequences in the mitochondrial DNA of Gramineae

A. Kanno, Mikio Nakazono, Atsushi Hirai, Toshiaki Kameya

Journal:

Current Genetics

Année:

1997

Langue:

english

Fichier:

PDF, 9.56 MB

english, 1997

24

Transcription of plastid-derived tRNA genes in rice mitochondria

S. Miyata, Mikio Nakazono, A. Hirai

Journal:

Current Genetics

Année:

1998

Langue:

english

Fichier:

PDF, 135 KB

english, 1998

25

Anaconda, a new class of transposon belonging to theMusuperfamily, has diversified by acquiring host genes during rice evolution

Kazuhiro Ohtsu, Hiro-Yuki Hirano, Nobuhiro Tsutsumi, Atsushi Hirai, Mikio Nakazono

Journal:

Molecular Genetics and Genomics

Année:

2005

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2005

26

cDNA microarray analysis of gene expression changes during pollination, pollen-tube elongation, fertilization, and early embryogenesis in rice pistils

Kaoru T. Yoshida, Makoto Endo, Mikio Nakazono, Hiroo Fukuda, Taku Demura, Tohru Tsuchiya, Masao Watanabe

Journal:

Plant Reproduction

Année:

2005

Langue:

english

Fichier:

PDF, 259 KB

english, 2005

27

A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection

Hirokazu Takahashi, Hisae Kamakura, Yutaka Sato, Katsuhiro Shiono, Tomomi Abiko, Nobuhiro Tsutsumi, Yoshiaki Nagamura, Naoko K. Nishizawa, Mikio Nakazono

Journal:

Journal of Plant Research

Année:

2010

Langue:

english

Fichier:

PDF, 406 KB

english, 2010

28

Apple phloem cells contain some mRNAs transported over long distances

Azumi Kanehira, Kaori Yamada, Tomomi Iwaya, Ryo Tsuwamoto, Atsushi Kasai, Mikio Nakazono, Takeo Harada

Journal:

Tree Genetics & Genomes

Année:

2010

Langue:

english

Fichier:

PDF, 519 KB

english, 2010

29

Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+

Yasuhiro Ishimaru, Motofumi Suzuki, Takashi Tsukamoto, Kazumasa Suzuki, Mikio Nakazono, Takanori Kobayashi, Yasuaki Wada, Satoshi Watanabe, Shinpei Matsuhashi, Michiko Takahashi, Hiromi Nakanishi, Sat

Journal:

The Plant Journal

Année:

2006

Langue:

english

Fichier:

PDF, 651 KB

english, 2006

30

Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission

Masaru Fujimoto, Shin-ichi Arimura, Shoji Mano, Maki Kondo, Chieko Saito, Takashi Ueda, Mikio Nakazono, Akihiko Nakano, Mikio Nishimura, Nobuhiro Tsutsumi

Journal:

The Plant Journal

Année:

2009

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2009

31

Characterization of the gene family for alternative oxidase from Arabidopsis thaliana

Daisuke Saisho, Eiji Nambara, Satoshi Naito, Nobuhiro Tsutsumi, Atsushi Hirai, Mikio Nakazono

Journal:

Plant Molecular Biology

Année:

1997

Langue:

english

Fichier:

PDF, 289 KB

english, 1997

32

A chloroplast derived trnH gene is expressed in the mitochondrial genome of gramineous plants

Akira Kanno, Mikio Nakazono, Atsushi Hirai, Toshiaki Kameya

Journal:

Plant Molecular Biology

Année:

1997

Langue:

english

Fichier:

PDF, 132 KB

english, 1997

33

Six percent of the mitochondrial genome in rice came from chloroplast DNA

Atsushi Hirai, Mikio Nakazono

Journal:

Plant Molecular Biology Reporter

Année:

1993

Langue:

english

Fichier:

PDF, 324 KB

english, 1993

34

Global expression profiling applied to plant development

Patrick S Schnable, Frank Hochholdinger, Mikio Nakazono

Journal:

Current Opinion in Plant Biology

Année:

2004

Langue:

english

Fichier:

PDF, 489 KB

english, 2004

35

A transposon-induced spontaneous mutation results in low β-amylase content in rice

Hiroaki Saika, Mikio Nakazono, Akira Ikeda, Junji Yamaguchi, Shunpei Masaki, Motoki Kanekatsu, Keisuke Nemoto

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 191 KB

english, 2005

36

Isolation of MaDEF from Muscari armeniacum and analysis of its expression using laser microdissection

Mutsumi Nakada, Megumi Komatsu, Toshinori Ochiai, Kazuhiro Ohtsu, Mikio Nakazono, Naoko K. Nishizawa, Ko Nitta, Ryutaro Nishiyama, Toshiaki Kameya, Akira Kanno

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 531 KB

english, 2006

37

A method for obtaining high integrity RNA from developing aleurone cells and starchy endosperm in rice (Oryza sativa L.) by laser microdissection

Tsutomu Ishimaru, Mikio Nakazono, Takehiro Masumura, Mafumi Abiko, Yumiko San-oh, Naoko K. Nishizawa, Motohiko Kondo

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 880 KB

english, 2007

38

Role of ethylene in acclimations to promote oxygen transport in roots of plants in waterlogged soils

Katsuhiro Shiono, Hirokazu Takahashi, Timothy D. Colmer, Mikio Nakazono

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 535 KB

english, 2008

39

Transcript levels of the nuclear-encoded respiratory genes in rice decrease by oxygen deprivation: evidence for involvement of calcium in expression of the alternative oxidase 1a gene

Hiroyuki Tsuji, Mikio Nakazono, Daisuke Saisho, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 190 KB

english, 2000

40

Induction of mitochondrial aldehyde dehydrogenase by submergence facilitates oxidation of acetaldehyde during re-aeration in rice

Hiroyuki Tsuji, Naoki Meguro, Yasuhiro Suzuki, Nobuhiro Tsutsumi, Atsushi Hirai, Mikio Nakazono

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 344 KB

english, 2003

41

A novel plant nuclear gene encoding chloroplast ribosomal protein S9 has a transit peptide related to that of rice chloroplast ribosomal protein L12

Shin-ichi Arimura, Shin Takusagawa, Shoji Hatano, Mikio Nakazono, Atsushi Hirai, Nobuhiro Tsutsumi

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 298 KB

english, 1999

42

Molecular and cellular characterizations of a cDNA clone encoding a novel isozyme of aldehyde dehydrogenase from rice

Yuhua Li, Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 570 KB

english, 2000

43

Characterization and expression of the genes for cytochrome c oxidase subunit VIb (COX6b) from rice and Arabidopsis thaliana

Kazuhiro Ohtsu, Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 393 KB

english, 2001

44

Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b

Hiroyuki Tsuji, Nobuhiro Tsutsumi, Takuji Sasaki, Atsushi Hirai, Mikio Nakazono

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 739 KB

english, 2003

45

Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature

Yusuke Ito, Daisuke Saisho, Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 243 KB

english, 1997

46

ATP synthesis inhibitors as well as respiratory inhibitors increase steady-state level of alternative oxidase mRNA in Arabidopsis thaliana

Daisuke Saisho, Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Journal of Plant Physiology

Année:

2001

Langue:

english

Fichier:

PDF, 65 KB

english, 2001

47

The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria

Mikio Nakazono, Yusuke Ito, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Current Genetics

Année:

1996

Langue:

english

Fichier:

PDF, 313 KB

english, 1996

48

Multiple initiation sites for transcription of a gene for subunit 1 of F1-ATPase (atp1) in rice mitochondria

Mikio Nakazono, Mayuko Ishikawa, Kaoru T. Yoshida, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Current Genetics

Année:

1996

Langue:

english

Fichier:

PDF, 561 KB

english, 1996

49

GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers

Hiroyuki Tsuji, Koichiro Aya, Miyako Ueguchi-Tanaka, Yukihisa Shimada, Mikio Nakazono, Ryosuke Watanabe, Naoko K. Nishizawa, Kenji Gomi, Asako Shimada, Hidemi Kitano, Motoyuki Ashikari, Makoto Matsuok

Journal:

The Plant Journal

Année:

2006

Langue:

english

Fichier:

PDF, 944 KB

english, 2006

50

The CRTA motif is present in the promoters of mitochondrial genes of rice

Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 843 KB

english, 1995